DNA to mRNA Converter

Convert coding DNA, template DNA, or RNA into aligned sequences and translate a chosen reading frame using the standard genetic code.

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On this pageCalculatorHow to useFormula & methodWorked exampleChoose the right DNA strandRead the selected frameInterpret stops and incomplete codonsSequence conversion has biological limitsFrequently asked questionsRelated calculatorsSources

How to use this calculator

  1. Paste up to 3,000 nucleotide letters. Lowercase, spaces, and line breaks are accepted; remove sequence headings, numbering, and punctuation.
  2. Choose coding DNA, template DNA, or RNA, and specify the direction in which your input is written. Direction describes the pasted text, not the desired output.
  3. Select the reading frame after RNA is oriented 5β€² to 3β€². Choose whether to stop at the first termination codon or display every complete codon.
  4. Compare the aligned sequences, protein letters, codon mapping, and status. Check skipped and incomplete bases before interpreting the translation.

Formula and method

Coding DNA β†’ RNA: replace T with U. Template DNA written 3β€²β†’5β€² β†’ RNA written 5β€²β†’3β€²: Aβ†’U, Tβ†’A, Cβ†’G, Gβ†’C. Frame f skips fβˆ’1 RNA bases, then reads complete groups of three. GC% = 100 Γ— (G + C) Γ· sequence length.

For the assumptions behind these results, read the explanation below. You can also explore DNA Copy Number and DNA Concentration.

A worked example

Coding DNA 5β€²-ATGGCTTAA-3β€² gives template DNA 3β€²-TACCGAATT-5β€² and RNA 5β€²-AUGGCUUAA-3β€². Frame 1 reads AUG, GCU, UAA: methionine, alanine, stop. The default protein is MA; showing all codons gives MA*. Three of nine bases are G or C, so GC content is 33.33%.

Choose the right DNA strand

Coding and template name the two strands relative to a particular transcript. The RNA sequence matches the coding strand when both are written 5β€² to 3β€², except that RNA uses uracil, U, where DNA uses thymine, T. The template strand provides complementary bases and runs in the opposite direction.

For a template written 3′ to 5′, apply A→U, T→A, C→G, and G→C directly across the line. If the template is written 5′ to 3′, reverse its order as well as complementing it. A direction change alone reverses a sequence; it does not exchange its bases.

Read the selected frame

A codon contains three RNA bases. Frame 1 groups bases 1–3, 4–6, and so on. Frame 2 begins at base 2, while frame 3 begins at base 3. These positions always refer to the normalized RNA output, even when the pasted input runs in the opposite direction.

The converter looks up each complete codon in the standard genetic code, NCBI table 1. It starts exactly where you choose, without finding a start codon or predicting an open reading frame. For example, UUG is displayed as leucine in this direct mapping; the tool does not apply special initiation rules.

Interpret stops and incomplete codons

UAA, UAG, and UGA are termination codons in this code. The default mode ends translation at the first one and excludes it from the amino-acid string. The codon mapping still shows the encountered stop. Show-all mode uses an asterisk for each stop and continues the lookup so that different frames can be inspected.

Letters beyond a stop in show-all mode are not a prediction of one uninterrupted protein. One or two bases left at the end cannot form a complete codon and are reported separately. Leading bases skipped by the frame are counted separately too. Full-sequence GC content includes those bases and any sequence after a stop.

Sequence conversion has biological limits

This tool treats the supplied letters as one continuous sequence. It does not remove introns, infer exon boundaries, add a cap or poly(A) tail, or simulate RNA editing. For an intended protein prediction, use an appropriately annotated coding sequence or processed transcript and confirm the reading frame.

An RNA input produces corresponding DNA sequence equivalents. Those letters do not reconstruct the original genomic region: processing may have removed or changed sequence information. Mitochondria and some organisms use different genetic codes, so their translations may differ. The tool also cannot determine expression, protein folding, activity, or whether a sequence is a real gene.

Frequently asked questions

Can I paste FASTA or ambiguous bases?

Paste only the sequence letters. FASTA headings, numbers, punctuation, and ambiguity symbols such as N are rejected so that the converter does not silently change the meaning of the input.

Why is my protein empty?

A selected frame may contain no complete triplet, or its first complete codon may be a stop. The result says None and the status explains the reason; the DNA and RNA conversions remain available.

Does an RNA sequence always encode a protein?

No. RNA includes noncoding molecules and untranslated regions. This converter can mechanically map a selected frame, but that alone does not establish a biological protein product.

Sources and further reading

Our explanations are written for BiologyCalc. Read how we build and check our tools. These calculations are educational estimates where the underlying model requires assumptions.